Create a taxonomic mapping file to Make Blast Database within OmicsBox OmicsBox allows creating a custom database to run Blast locally. The blast algorithm will run on the user’s computer against a database that is installed locally.In order to do so, we have to either download a pre-formatted NCBI database (see tutorial) or format our own database (see this tutorial
This provides example data to be used in OmicsBox.
This article provides a discount code valid for 3 month for the Metagenomics Module in OmicsBox.
OmicsBox Supported Project Researchers: Background and Project Overview: A.baumannii, a nosocomial pathogen, ranks first in the WHO’s list of antibiotic-resistant priority pathogen. The problem of increasing frequency of multi-drug resistance in A. baumannii has been further compounded by tolerance to high concentration of antibiotics due to persister cells. Persister cells are phenotypic variants of normal cells that are formed in
We are happy to announce that during the next 6 month, starting on the 1st of July, we will grant a full-featured 6-month OmicsBox subscription to 5 selected student projects – each month! Please submit before the 15th of each month to participate. Please send us a short description (200 words max.) of your research project including planned bioinformatics work and
This article provide details of the latest version of OmicsBox.
BioBam Bioinformatics S.L. Supported Project. Researchers: Nahid Hosseinzadeh Gharajeh Mohammad Amin Hejazi Mostafa Valizadeh Ebrahim Dorani Background and Project Overview: Dunaliella is a unicellular, halotolerant, biflagellate microalga which is already exploited as a platform in food, feed, aquaculture, biomedical, pharmaceutical, nutraceutical and cosmeceutical industries, specifically due to its high production of β-carotene and fine chemicals. There is a wide range
This article explains how to export a GFF file with GO terms in Blast2GO.
This article explains how to start functional enrichment analysis of pairwise differential genes in Blast2GO.
