OmicsBox allows running Blast locally. The blast algorithm will run on the user’s computer against a database that is installed locally. In order to do so, we have to either download a pre-formatted NCBI database or format our own database (see this tutorial until step 3). Pre-formatted databases can be downloaded directly from the NCBI ftp or via a Perl script provided by
(Release Date: 01/10/2015) You can now perform Blast and InterProScan from within the CLI, which means you can run the whole functional annotation analysis with just one command. Find here some useful command line examples.
Blast2GO Command Line Examples (Version 1.4 release date: 01/10/2015) In the Blast2GO Command Line Manual (PDF) you can now find several practical examples which will help you to get started with Blast2GO over the command line. Request your trail here.
(Release Date: 01/08/2015) This new version allows to work with multiple projects in parallel, a new FileManger to organizer all your data, run RFAM analysis and much more.
Release Summary BioBam and Biomatters announce the launch of a solution for the functional annotation and analysis of genomics datasets: Blast2GO PRO Plugin for Geneious.
Update: Since Blast2GO v.4 or in OmicsBox you can create your Blast Database directly from within the application. See screenshots below. Note: This tutorial is based on the NCBI blast binaries released in 2014 and some parameters might have changed since then If you want to blast your sequences against an own own database you need to create a custom
CLC bio and BioBam Deliver Integrated Workflow to Functionally Annotate De Novo Sequenced Genomes and Transcriptomes Release Summary CLC bio and BioBam announce an integrated workflow for researchers working with non-model organisms without reference sequences.
